Wired has updated the story "Update: Microsoft called Wired after this story was originally published to say that the company did have a plan for used games, and that further details were forthcoming.)"
There is no direct quote from MSFT saying there is a fee to play used games. Other sources refuting this
Jon Hicks XBox Magazine: Jon Hicks @MrJonty
"Again, at no point when I was talking to MS did they say there was a fee for used games. They said used games were important and supported."
SNE has already come out and supported used games. IMO No way MSFT charges a fee if SNE does not.