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Pacific Biosciences of California, Inc. Message Board

  • rekhaus rekhaus Feb 16, 2013 7:28 AM Flag

    PACB publications

    Here are some PACB publication. Be educated investor, and not run behind the herd.

    Results: 1 to 20 of 36

    1.
    Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.
    Melters DP, Bradnam KR, Young HA, Telis N, May MR, Ruby JG, Sebra R, Peluso P, Eid J, Rank D, Fernando Garcia J, Derisi JL, Smith T, Tobias C, Ross-Ibarra J, Korf I, Chan SW.
    Genome Biol. 2013 Jan 30;14(1):R10. [Epub ahead of print]
    PMID: 23363705 [PubMed - as supplied by publisher]
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    2.
    ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies.
    Clark SC, Egan R, Frazier PI, Wang Z.
    Bioinformatics. 2013 Feb 15;29(4):435-43. doi: 10.1093/bioinformatics/bts723. Epub 2013 Jan 9.
    PMID: 23303509 [PubMed - in process]
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    3.
    16(th) IHIW : Review of HLA typing by NGS.
    De Santis D, Dinauer D, Duke J, Erlich HA, Holcomb CL, Lind C, Mackiewicz K, Monos D, Moudgil A, Norman P, Parham P, Sasson A, Allcock RJ.
    Int J Immunogenet. 2013 Feb;40(1):72-6. doi: 10.1111/iji.12024.
    PMID: 23302098 [PubMed - in process]
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    4.
    Direct sequencing of small genomes on the Pacific Biosciences RS without library preparation.
    Coupland P, Chandra T, Quail M, Reik W, Swerdlow H.
    Biotechniques. 2012 Dec;53(6):365-72. doi: 10.2144/000113962.
    PMID: 23227987 [PubMed - in process] Free Article
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    5.
    Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.
    English AC, Richards S, Han Y, Wang M, Vee V, Qu J, Qin X, Muzny DM, Reid JG, Worley KC, Gibbs RA.
    PLoS One. 2012;7(11):e47768. doi: 10.1371/journal.pone.0047768. Epub 2012 Nov 21.
    PMID: 23185243 [PubMed - in process] Free PMC Article
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    6.
    Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism.
    Archer J, Weber J, Henry K, Winner D, Gibson R, Lee L, Paxinos E, Arts EJ, Robertson DL, Mimms L, Quiñones-Mateu ME.
    PLoS One. 2012;7(11):e49602. doi: 10.1371/journal.pone.0049602. Epub 2012 Nov 14.
    PMID: 23166726 [PubMed - in process] Free PMC Article
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    7.
    Feasibility of real time next generation sequencing of cancer genes linked to drug response: Results from a clinical trial.
    Tran B, Brown AM, Bedard PL, Winquist E, Goss GD, Hotte SJ, Welch SA, Hirte HW, Zhang T, Stein LD, Ferretti V, Watt S, Jiao W, Ng K, Ghai S, Shaw P, Petrocelli T, Hudson TJ, Neel BG, Onetto N, Siu LL, McPherson JD, Kamel-Reid S, Dancey JE.
    Int J Cancer. 2013 Apr 1;132(7):1547-55. doi: 10.1002/ijc.27817. Epub 2012 Oct 11.
    PMID: 22948899 [PubMed - in process]
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    8.
    Expression of vasa and nanos3 during primordial germ cell formation and migration in Atlantic cod (Gadus morhua L.).
    Presslauer C, Nagasawa K, Fernandes JM, Babiak I.
    Theriogenology. 2012 Oct 1;78(6):1262-77. doi: 10.1016/j.theriogenology.2012.05.022. Epub 2012 Aug 13.
    PMID: 22898013 [PubMed - indexed for MEDLINE]
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    9.
    Pacific biosciences sequencing technology for genotyping and variation discovery in human data.
    Carneiro MO, Russ C, Ross MG, Gabriel SB, Nusbaum C, DePristo MA.
    BMC Genomics. 2012 Aug 5;13:375. doi: 10.1186/1471-2164-13-375.
    PMID: 22863213 [PubMed - indexed for MEDLINE] Free PMC Article
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    10.
    A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.
    Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y.
    BMC Genomics. 2012 Jul 24;13:341. doi: 10.1186/1471-2164-13-341.
    PMID: 22827831 [PubMed - indexed for MEDLINE] Free PMC Article
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    11.
    From genes to behavior: investigations of neurochemical signaling come of age for the model crustacean Daphnia pulex.
    Christie AE, McCoole MD.
    J Exp Biol. 2012 Aug 1;215(Pt 15):2535-44. doi: 10.1242/jeb.070565.
    PMID: 22786629 [PubMed - indexed for MEDLINE] Free Article
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    12.
    Improving genome assemblies by sequencing PCR products with PacBio.
    Zhang X, Davenport KW, Gu W, Daligault HE, Munk AC, Tashima H, Reitenga K, Green LD, Han CS.
    Biotechniques. 2012 Jul;53(1):61-2. doi: 10.2144/0000113891.
    PMID: 22780321 [PubMed - indexed for MEDLINE] Free Article
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    13.
    A hybrid approach for the automated finishing of bacterial genomes.
    Bashir A, Klammer AA, Robins WP, Chin CS, Webster D, Paxinos E, Hsu D, Ashby M, Wang S, Peluso P, Sebra R, Sorenson J, Bullard J, Yen J, Valdovino M, Mollova E, Luong K, Lin S, LaMay B, Joshi A, Rowe L, Frace M, Tarr CL, Turnsek M, Davis BM, Kasarskis A, Mekalanos JJ, Waldor MK, Schadt EE.
    Nat Biotechnol. 2012 Jul 1;30(7):701-7. doi: 10.1038/nbt.2288.
    PMID: 22750883 [PubMed - indexed for MEDLINE]
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    14.
    Going beyond five bases in DNA sequencing.
    Korlach J, Turner SW.
    Curr Opin Struct Biol. 2012 Jun;22(3):251-61. doi: 10.1016/j.sbi.2012.04.002. Epub 2012 May 9. Review.
    PMID: 22575758 [PubMed - indexed for MEDLINE]
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    15.
    Direct detection and sequencing of damaged DNA bases.
    Clark TA, Spittle KE, Turner SW, Korlach J.
    Genome Integr. 2011 Dec 20;2:10. doi: 10.1186/2041-9414-2-10.
    PMID: 22185597 [PubMed] Free PMC Article
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    16.
    Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing.
    Clark TA, Murray IA, Morgan RD, Kislyuk AO, Spittle KE, Boitano M, Fomenkov A, Roberts RJ, Korlach J.
    Nucleic Acids Res. 2012 Feb;40(4):e29. doi: 10.1093/nar/gkr1146. Epub 2011 Dec 7.
    PMID: 22156058 [PubMed - indexed for MEDLINE] Free PMC Article
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    17.
    Field guide to next-generation DNA sequencers.
    Glenn TC.
    Mol Ecol Resour. 2011 Sep;11(5):759-69. doi: 10.1111/j.1755-0998.2011.03024.x. Epub 2011 May 19.
    PMID: 21592312 [PubMed - indexed for MEDLINE]
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    18.
    Genome-sequencing anniversary. First steps on a long road.
    Schadt E.
    Science. 2011 Feb 11;331(6018):691. doi: 10.1126/science.1203235. No abstract available.
    PMID: 21310999 [PubMed - indexed for MEDLINE] Free Article
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    19.
    The origin of the Haitian cholera outbreak strain.
    Chin CS, Sorenson J, Harris JB, Robins WP, Charles RC, Jean-Charles RR, Bullard J, Webster DR, Kasarskis A, Peluso P, Paxinos EE, Yamaichi Y, Calderwood SB, Mekalanos JJ, Schadt EE, Waldor MK.
    N Engl J Med. 2011 Jan 6;364(1):33-42. doi: 10.1056/NEJMoa1012928. Epub 2010 Dec 9.
    PMID: 21142692 [PubMed - indexed for MEDLINE] Free PMC Article
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    20.
    Advances in whole genome sequencing technology.
    Zhao J, Grant SF.
    Curr Pharm Biotechnol. 2011 Feb 1;12(2):293-305. Review.
    PMID: 21050163 [PubMed - indexed for MEDLINE]
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PACB
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